Bulletin of Experimental Treatments for AIDS (BETA), published by the San Francisco AIDS Foundation, is one of the most comprehensive HIV treatment publications, with hundreds of in-depth articles.

Published in the Bulletin of Experimental Treatments for AIDS Spring 2001 issue, by the San Francisco AIDS Foundation.

BETA
Spring 2001 Table of Contents

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Glossary

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W-Z

A

ABSCESS: an isolated accumulation of pus associated with a localized infection. Abscesses may result in tissue destruction, pain, and swelling; severe abscesses may require surgical drainage.

ADHERENCE: following a prescribed treatment regimen, including correct dosage, number of doses per day, and dietary restrictions.

AMYLASE: an enzyme produced by the salivary glands and the pancreas that helps break down food. An abnormal increase in serum amylase levels may indicate
inflammation of the pancreas (pancreatitis).

ANAL INTRAEPITHELIAL NEOPLASIA (AIN): the abnormal growth of cells of the anus, which may be a precursor of anal cancer.

ANTIBODY (AB, IMMUNOGLOBULIN, IG):
an immunoglobulin protein secreted by activated plasma cells, which evolve from B-cells. Antibodies are present throughout the blood and tissues; they are produced in response to stimulation by foreign antigens as part of the body's defense against disease. Specific antibodies bind to and act upon specific antigens; the antigen/antibody reaction forms the basis of humoral (TH2) immunity. Neutralizing antibodies destroy or inactivate infectious agents, while enhancing antibodies promote infection.

ANTIRETROVIRAL: an agent (e.g., AZT, ddI, or nevirapine) that suppresses the activity or replication of retroviruses such as HIV.

B

BETA BLOCKER DRUGS: one of a large group of medications that obstruct specific nervous system receptors, causing a deceleration of the heart rate, a reduction in blood pressure, and reduced anxiety. Beta blockers are used to treat high blood pressure, angina, and other conditions.

BILIRUBIN: a pigment produced when the liver processes waste products. A high bilirubin level causes yellowing of the skin.

BLOOD-BRAIN BARRIER: a physical barrier between the blood vessels and the brain that is selectively permeable, i.e., allows only certain substances to pass through.

BRANCHED-CHAIN DNA ASSAY (bDNA, QUANTIPLEX HIV RNA ASSAY): a test that measures the amount of virus (viral load) in plasma or tissue using a chemical signal, visible as light, that is produced by viral RNA.

BREAKTHROUGH: a condition that develops despite measures to prevent it (e.g., PCP that occurs while taking a prophylactic drug). Also, a rise in viral load after it has fallen due to anti-HIV therapy (virological breakthrough).

BUFFALO HUMP: dorsocervical (or cervicodorsal) fat pad; an accumulation of fatty tissue on the upper back at the base of the neck.

C

CARDIOVASCULAR: refers to the circulatory system (the heart and blood vessels).

CD4 CELL (CD4 LYMPHOCYTE, T-HELPER CELL, T4 CELL): a type of white blood cell that carries the CD4 cell surface receptor and helps the body fight infection. CD4 cells release cytokines (chemical messengers) that coordinate a broad range of immune system activities including killer cell activation and antibody production.

CD4 CELL COUNT (T-HELPER CELL COUNT): the absolute number of CD4 lymphocytes in one cubic millimeter (mm3) of blood. The CD4 cell count is one indicator of the progression of HIV disease.

CERVICODORSAL FAT PAD: see buffalo hump.

CHRONIC: less intense, slow, persisting over a long period. Contrast with acute.

COCCIDIOIDOMYCOSIS (VALLEY FEVER): a fungal disease acquired by inhaling dust particles containing spores of Coccidioides immitis. The disease affects the upper respiratory tract and lungs, and may sometimes disseminate to visceral organs, bones, skin, and other tissues. Symptoms include cough, fatigue, fever, and weight loss.

COHORT: a group of individuals in a study who share a demographic, clinical, or other statistical characteristic (e.g., age or study site).

CROSS-RESISTANCE: the development of resistance to one agent (e.g., a drug) that also confers resistance to another agent (e.g., a similar drug of the same class).

CRYPTOSPORIDIOSIS: a disease caused by the protozoan Cryptosporidium parvum, which is transmitted by contact with animal feces, ingestion of contaminated food or water, or oral-anal sexual contact (rimming). It can cause severe, chronic diarrhea, weight loss, and lymphadenopathy.

CYTOKINE: an intercellular hormone or chemical messenger protein (e.g., tumor necrosis factor, interleukin) released by white blood cells (e.g., macrophages, T cells). Cytokines facilitate communication among immune system cells and between immune system cells and the rest of the body.

CYTOMEGALOVIRUS (CMV, HUMAN HERPESVIRUS 5): a herpesvirus. CMV infection often occurs in healthy individuals without causing symptoms. In immunocompromised individuals (usually with CD4 cell counts below 50 cells/mm3), CMV may cause serious illness including retinitis (inflammation of the retina), pneumonia, colitis (inflammation of the large bowel), and encephalitis. CMV may be treated with ganciclovir, foscarnet, or cidofovir.

D

DNA (DEOXYRIBONUCLEIC ACID): a molecule that encodes genetic information and is found in the nucleus of cells as a twisted double-stranded chain. The particular sequence of four chemical building blocks (nucleotides) adenine, cytosine, guanine, and thymine—that make up a DNA chain determines the unique genetic code of an individual.

E

ELECTROLYTE: an electrically charged element or compound (e.g., sodium, potassium) found in body fluids, tissues, and cells. An imbalance of electrolytes can result from prolonged vomiting or diarrhea, and may lead to the disruption of many bodily processes, possibly resulting in muscle weakness, cramps, or seizures.

EPIDEMIOLOGY: the study of the frequency, distribution, and behavior of a disease within a population.

EPSTEIN-BARR VIRUS (EBV, HUMAN HERPESVIRUS 4):a herpesvirus. EBV infection is common and usually asymptomatic in children, but may cause infectious mononucleosis in young adults. It is associated with oral hairy leukoplakia, lymphoid interstitial pneumonitis, and some types of cancer in people with HIV disease.

ESTRADIOL: a potent form of estrogen produced by the ovaries, placenta, and testes.

ESTROGEN: a female sex hormone; a natural or synthetic substance (e.g., estradiol, Premarin) that stimulates the development of female secondary sex characteristics and regulates the reproductive cycle in women. Estrogens are known to affect the immune system.

ETHINYL ESTRADIOL: a semisynthetic estrogen often used in oral contraceptives.

F

FOLLICLE STIMULATING HORMONE (FSH): in women, follicle stimulating hormone stimulates the development of ovarian follicles (eggs) and stimulates the release of estrogens.

FOLLICULAR PHASE: the preovulatory phase of a woman’s reproductive cycle during which the follicle grows and high estrogen levels cause the uterine lining to grow.

G

GASTROINTESTINAL: pertaining to the stomach and intestines.

GENE (adjective GENETIC): the unit of heredity. A gene contains hereditary information encoded in the form of DNA and is located at a specific position on a chromosome in a cell’s nucleus.

GLUCOCORTICOID: a steroid-like substance (e.g., cortisol) capable of influencing metabolism, regulating the immune system, and exerting an anti-inflammatory effect.

GLUCOSE (BLOOD SUGAR): a form of sugar that is the body’s primary fuel; glucose broken down from food can be converted into energy or stored. Abnormally low or high levels of glucose in the blood often indicate metabolic disturbances (e.g., diabetes).

H

HABITUS: physical or constitutional characteristics.

HALF-LIFE: the time required for half the amount of an agent (e.g., drug, virus, cell type) to be eliminated from the body.

HEMOGLOBIN (Hb): the red, iron-based pigment in red blood cells that enables them to transport oxygen.

HEPATITIS: an inflammation of the liver that may be caused by several agents, including viruses, toxins, or drugs. Acute hepatitis is typically characterized by fever, jaundice, fatigue, abdominal tenderness, and elevated liver enzymes. Hepatitis A virus (HAV) causes an inflammatory viral disease with a short incubation period. Hepatitis B and C can become chronic and may result in liver damage, cirrhosis, or liver cancer. There are also hepatitis viruses D, E, F, and G.

HISTOPLASMOSIS: a fungal infection acquired by inhaling spores of the fungus Histoplasma capsulatum, which are present in soil or dust. The disease most often affects the lungs, where it produces a tuberculosis-like inflammation, but may also disseminate. Symptoms include cough, fever, and weight loss. The disease may be life-threatening in indiviuals with suppressed immune systems.

HORMONE: a chemical messenger (e.g., adrenaline, testosterone) involved in the regulation and coordination of cellular and bodily functions.

HUMAN PAPILLOMAVIRUS (HPV): a papovavirus, many strains of which cause warts, including condylomata acuminata (genital warts). Certain strains of HPV (e.g., 16, 18) are associated with cervical, anal, and oral cancer.

HYPERMENORRHEA: unusually frequent or heavy menstrual bleeding.

I

INTENT-TO-TREAT ANALYSIS: analysis that requires the inclusion of all randomized subjects, regardless of whether they remain on protocol for the duration of the study.

INTERMITTENT: occurring sporadically or in phases.

K

KAPOSI’S SARCOMA (KS): an abnormal or cancerous proliferation of cells of the blood and/or lymph vessels causing tumors on the skin, mucous membranes, and/or internal organs. KS typically appears as purplish or brownish lesions, and is associated with a herpesvirus (KSHV, or HHV-8).

L

LEUTENIZING HORMONE (LH): a hormone produced by the pituitary gland that acts with FSH (follicle stimulating hormone) to stimulate ovulation, and androgen and progesterone secretion.

LIPID: a fat.

LIPODYSTROPHY: a loss of fatty tissue, usually in the limbs and face. The term is sometimes used to refer to any type of body fat redistribution.

LIPOPROTEIN: a compound composed of protein and fats.

LUTEAL PHASE: the postovulatory phase of a woman’s menstrual cycle. See also ovulation..

M

MATERNAL-FETAL BARRIER: the placental barrier. See placenta.

MEAN: a statistical measurement of the central tendency, or average, of a set of values. Contrast with median.

MEDIAN: the number within a series that is preceded and followed by an equal number of values. Contrast with mean.

MENSTRUAL CYCLE: the reproductive cycle of female humans characterized by a monthly discharge of blood, mucus, and tissues from the uterus. This cycle involves changes to the uterine wall during the rest of the month including a few days of fertility after an ovum (egg) is released from an ovary.

MOLECULE: a small unit of matter made up of atoms. A molecule is the smallest unit of a substance that retains its unique characteristics.

MONONUCLEOSIS (KISSING DISEASE): an infectious disease caused by the Epstein-Barr virus that is easily transmitted via saliva. The disease is characterized by a sore throat, fatigue, and possibly swollen lymph nodes or a swollen spleen.

MUTATION: a change in the character of a gene that is perpetuated when a cell divides or a virus replicates. A mutant is a new strain of an organism produced by a genetic mutation.

MYCOBACTERIUM AVIUM COMPLEX (MAC): an opportunistic disease caused by Mycobacterium avium or Mycobacterium intracellulare (sometimes referred to as Mycobacterium avium-intracellulare or MAI), bacteria found in soil and water. In immunosuppressed persons, the bacteria can infect the lymph nodes, intestines, bone marrow, liver, spleen, spinal fluid, lungs, and the gastrointestinal tract, and may become disseminated. MAC is the most common bacterial infection in persons with advanced AIDS (usually with CD4 cell counts below 5075 cells/mm3). Symptoms include diarrhea, wasting, fever, night sweats, fatigue, and spleen enlargement. Clarithromycin is used as treatment and prophylaxis for MAC.

N

NNRTI: see non-nucleoside reverse transcriptase inhibitor.

NON-NUCLEOSIDE REVERSE TRANSCRIPTASE INHIBITOR (NNRTI): a drug (e.g., nevirapine, delavirdine, efavirenz) that binds with and inhibits the action of the HIV reverse transcriptase enzyme, thus blocking viral transcription and replication.

NORETHINDRONE:a synthetic hormone with actions similar to progesterone but functioning as a more potent inhibitor of ovulation.

NRTI: see nucleoside reverse transcriptase inhibitor.

NUCLEOSIDE ANALOG: see nucleoside reverse transcriptase inhibitor.

NUCLEOSIDE REVERSE TRANSCRIPTASE INHIBITOR (NRTI, also known as NUCLEOSIDE ANALOG): a compound (e.g., AZT, ddI, ddC, d4T, 3TC) that mimics one of the building blocks of DNA. These compounds suppress retroviral replication by interfering with the reverse transcriptase enzyme.

O

OPPORTUNISTIC INFECTION (OI): a disease caused by a microorganism that does not normally cause illness in a person with a healthy immune system, but that may cause serious disease when the immune system is weakened. Common OIs in HIV positive people include Pneumocystis carinii pneumonia (PCP), Mycobacterium avium complex (MAC), and cytomegalovirus (CMV) infection.

OVARY: one of the two female gonads located within the abdomen on either side of the uterus. The ovaries are the site of egg (ovum) storage and maturation.

OVULATION: the process by which an ovum (egg) is discharged from an ovary.

P

PAPANICOLAOU SMEAR (PAP SMEAR): a procedure in which a specimen of cells is taken from the uterine cervix or anus, prepared on a slide, and examined under a microscope for abnormal cell growth. An abnormal Pap smear suggests increased risk of developing cancer.

P-GLYCOPROTEIN: a family of plasma membrane proteins which, when overexpressed, can cause multidrug resistance.

PHARMACOLOGICAL: See pharmacology.

PHARMACOLOGY: the science of drugs, their sources, and how they work.

PLACENTA: the organ that connects the fetus and the mother’s uterus and enables the exchange of oxygen and nutrients.

PNEUMOCYSTIS CARINII PNEUMONIA (PCP): a life-threatening opportunistic type of pneumonia believed to be caused by a protozoan. PCP is a common infection that can cause severe illness in immunocompromised people (especially those with CD4 cell counts of fewer than 200 cells/mm3); it remains a leading cause of death in people with AIDS. Symptoms include dry cough, fever, chest tightness, and shortness of breath. Pneumocystis carinii can also infect other parts of the body. First-line treatment and primary prophylaxis is TMP-SMX (Bactrim, Septra); other treatments and prophylaxes include dapsone, pentamidine, and atovaquone.

POLYMERASE CHAIN REACTION (PCR) ASSAY: a highly sensitive test that can detect small amounts of DNA or RNA (genetic material) in a blood or tissue sample using an amplification technique that multiplies the existing DNA/RNA so that it can more easily be detected. PCR assays are used to determine viral loads in persons infected with HIV.

PRODRUG: an inactive form of a drug that exerts its effects after metabolic processes within the body convert it to a usable or active form.

PROGESTIN: a hormone produced by the corpus luteum, placenta, or adrenal cortex (or synthetically manufactured) that has progesterone-like effects. Synthetic progestin is used as a contraceptive.

PROLACTIN: a pituitary hormone that stimulates the secretion of breast milk.

PROPHYLAXIS (PX): therapy that helps to prevent a disease or condition before it occurs (primary prophylaxis) or recurs (secondary prophylaxis).

PROTEASE INHIBITOR (PI): a drug (e.g., saquinavir, ritonavir, indinavir, nelfinavir, amprenavir) that blocks the action of the HIV protease enzyme, thereby preventing viral replication. Unlike reverse transcriptase inhibitors, protease inhibitors can inhibit HIV replication in cells that are already infected.

PSYCHOSTIMULANT: a drug that causes increased responsiveness of the mind.

R

RESISTANCE: the mutation of a microorganism in such a way that it loses its sensitivity to a drug; a resistant organism can function and replicate despite the drug’s presence. Contrast with susceptible. Genotypic and phenotypic resistance tests are used to measure whether an organism is resistant to a drug. See also cross-resistance.

RIBONUCLEIC ACID (RNA): a single-stranded nucleic acid that encodes genetic information. RNA takes the place of DNA in retroviruses such as HIV. The presence of HIV RNA in the plasma indicates that the virus is actively replicating.

RNA: see ribonucleic acid.

S

SEROCONVERSION: the development of antibodies directed against an antigen; the change in a person’s antibody status from negative to positive. Vaccine-induced seroconversion is not an infection.

SERONEGATIVE: having a blood test that does not indicate infection with a microorganism (e.g., HIV), either by the presence of antibodies or antigens.

SEROPOSITIVE: having a blood test result that indicates infection with a microorganism (e.g., HIV). A test may detect either antibodies to an organism (antibody positive) or the organism or its proteins (antigen positive).

SUBCUTANEOUS: beneath the skin; subdermal.

SURROGATE MARKER: a marker or sign that can serve in place of a clinical endpoint such as disease progression or death. Surrogate markers for HIV disease may be virologic (e.g., viral load), immunologic (e.g., CD4 cell count), or clinical (e.g., weight loss).

SUSCEPTIBLE: vulnerable to or potentially able to contract a disease. Also refers to a microorganism that is vulnerable to the effects of a drug. Contrast with resistance.

SYMPTOMATIC: showing outward signs of a disease.

SYNERGY (SYNERGISM, adjective SYNERGISTIC): an interaction between agents (e.g., drugs) that produces an effect greater than the combined effects of the same agents used separately.

T

TESTOSTERONE: a steroid hormone produced by the testes and adrenal glands. Testosterone is required for sperm production, the development of the male reproductive organs, and the emergence of male secondary sexual characteristics. The hormone is also required for the buildup of lean muscle mass.

THYROID GLAND: an organ at base of the neck that produces thyroxin and other hormones.

TOXICITY (adjective TOXIC): the quality of being poisonous or harmful; often used to refer to side effects of drugs.

TOXOPLASMOSIS: an opportunistic infection caused by the microscopic protozoan Toxoplasma gondii, found in undercooked meat and cat feces. Symptoms may include headache, lymphadenopathy, malaise, muscle pain, and fever. A common manifestation of the disease is toxoplasmic encephalitis (cerebral toxoplasmosis), characterized by brain swelling, confusion, lethargy, seizures, and coma; the eyes, heart, and lungs may also be affected. Toxoplasmosis is treated with pyramethamine, usually in combination with other drugs; TMP-SMX may be used as prophylaxis.

TRIGLYCERIDE: a combination of glycerol and fatty acid that circulates in the blood.

TUBERCULOSIS (TB): an infectious disease caused by Mycobacterium tuberculosis that typically affects the lungs (pulmonary TB), but may also occur in other organs (extrapulmonary TB). Transmission generally occurs through inhalation of aerosolized sputum droplets. A combination of four chemotherapeutic drugs is standard therapy. Multidrug-resistant tuberculosis (MDRTB) is resistant to several standard drugs and requires more aggressive treatment.

TUMOR NECROSIS FACTOR (TNF, CACHECTIN): a cytokine (chemical messenger) that can destroy tumors. When chronically elevated, as may occur in HIV disease, TNF-alpha (one type of TNF) may lead to fever, anorexia, hypermetabolism, and wasting. TNF-alpha may block the production of enzymes that digest fats, leading to the breakdown of muscle tissue. In laboratory tests TNF-alpha has been shown to stimulate HIV replication.

V

VIRAL BREAKTHROUGH: see breakthrough.

VIRAL LOAD (VIRAL BURDEN): the amount of virus in the blood or body tissues. The presence of HIV RNA indicates that the virus is replicating. Changes in viral load may be used to gauge drug effectiveness and disease progression. Viral load is measured using tests such as polymerase chain reaction (PCR) or branched-chain DNA (bDNA), and is typically expressed as the number of copies of RNA per milliliter (mL) of blood plasma.

VIRAL REPLICATION: multiplication or reproduction of a virus in a person’s blood.

VIRAL SUPPRESSION: the cessation of detectable viral replication in a person’s blood.

VIREMIA: the presence of virus in the blood.

Page last updated 30 May 2001


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